08/07/2020

Near-optimal Algorithm for Constructing Greedy Consensus Tree

Hongxun Wu

Keywords: phylogenetic trees, greedy consensus trees, splay tree

Abstract: In biology, phylogenetic trees are important tools for describing evolutionary relations, but various data sources may result in conflicting phylogenetic trees. To summarize these conflicting phylogenetic trees, consensus tree methods take k conflicting phylogenetic trees (each with n leaves) as input and output a single phylogenetic tree as consensus. Among the consensus tree methods, a widely used method is the greedy consensus tree. The previous fastest algorithms for constructing a greedy consensus tree have time complexity Õ(kn^1.5) [Gawrychowski, Landau, Sung, Weimann 2018] and Õ(k²n) [Sung 2019] respectively. In this paper, we improve the running time to Õ(kn). Since k input trees have Θ(kn) nodes in total, our algorithm is optimal up to polylogarithmic factors.

 0
 0
 0
 0
This is an embedded video. Talk and the respective paper are published at ICALP 2020 virtual conference. If you are one of the authors of the paper and want to manage your upload, see the question "My papertalk has been externally embedded..." in the FAQ section.

Comments

Post Comment
no comments yet
code of conduct: tbd

Similar Papers